HTSeqGenie (version 4.2.0)

filterQuality: Filter reads by quality

Description

Filtering reads by quality score. Discards reads that have more than a fraction of X nucleotides with a score below Y.

Usage

filterQuality(lreads)

Arguments

lreads

A list of ShortReadQ objects

Value

A list of quality filterered ShortReadQ objects

Details

X and Y are controlled by global config variables X: filterQuality.minFrac Y: filterQuality.minQuality