HTSeqGenie (version 4.2.0)

getRRNAIds: Detect reads that look like rRNA

Description

Detect reads that look like rRNA

Usage

getRRNAIds(file1, file2 = NULL, tmp_dir, rRNADb)

Arguments

file1

FastQ file of forward reads

file2

FastQ of reverse reads in paired-end sequencing, NULL otherwise

tmp_dir

temporary directory used for storing the gsnap results

rRNADb

Name of the rRNA sequence database. Must exist in the gsnap genome directory

Value

IDs of reads flagged as rRNA