HTSeqGenie (version 4.2.0)

isAboveQualityThresh: Check for high quality reads

Description

Checks whether reads have more than a fraction of minFrac nucleotides with a score below minquality.

Usage

isAboveQualityThresh(reads, minquality, minfrac)

Arguments

reads

A set of reads as ShortReadQ object

minquality

Minimal quality score

minfrac

Fraction of positions that need to be over minquality to be considered a good read.

Value

A boolean vector indicating whether read is considered high quality.