markDuplicates: markDuplicates
Description
Mark duplicates in bam
Usage
markDuplicates(bamfile, outfile = NULL, path = getOption("picard.path"))
Arguments
bamfile
Name of input bam file
outfile
Name of output bam file
path
Full path to MarkDuplicates jar
Value
Path to output bam file
Details
Use MarkDuplicates from PicardTools to
mark duplicate alignments in bam file.