reconstructData

An instance of <code>harmanresults</code>.

object

string, legal values are <code>original</code> or <code>corrected</code>.

this


Method which reverts the PCA factorisation for instances of
<code><a rd-options="" href="/link/harmanresults?package=Harman&version=1.0.2" data-mini-rdoc="Harman::harmanresults">harmanresults</a></code>. This allows the original or corrected data to be
returned back from the PCA domain into the original data domain.


Harman is a PCA and constrained optimisation based
technique that maximises the removal of batch effects from
datasets, with the constraint that the probability of
overcorrection (i.e. removing genuine biological signal along
with batch noise) is kept to a fraction which is set by the
end-user.

Jason Ross

Harman

The removal of batch effects from datasets using a PCA and
constrained optimisation based technique

reconstructData function

Method which reverts the PCA factorisation for instances of
<code><a href="harmanresults" rd-options="">harmanresults</a></code>. This allows the original or corrected data to be
returned back from the PCA domain into the original data domain.

reconstructData: Reconstruct corrected data from Harman results

Description

Usage

Arguments

Value

See Also

Examples