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HiCfeat (version 1.4)

Multiple Logistic Regression for 3D Chromatin Domain Border Analysis

Description

We propose a multiple logistic regression model to assess the influences of genomic features such as DNA-binding proteins and functional elements on topological domain borders.

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Version

Install

install.packages('HiCfeat')

Monthly Downloads

15

Version

1.4

License

GPL-2

Maintainer

Raphael Mourad

Last Published

December 4th, 2018

Functions in HiCfeat (1.4)

readGFBed

Read genomic feature bed file
borderAnalysisFun

Multivariate enrichment test for chromatin domain borders
dataExample

Read chromatin domain bed file
readGFWig

Read genomic feature bigwig file
averagePerBin

Compute average value of a genomic feature for each bin.
HiCfeat-package

HiCfeat
readDomBed

Read chromatin domain bed file