annotateHiCBin

A GRanges object containing the Hi-C bins.

HiC_bin.GR

A GRanges object containing the genomic feature intervals.

GenomicFeature.GR

This is an internal function. Function to compute the average value of a genomic feature over a set of non-overlapping bins (Hi-C bins). Genomic features can be ChIP-seq peak intervals.

We propose a generalized linear regression with higher-order interaction terms to assess the influences of genomic features such as DNA-binding proteins and functional elements on long-range contacts from Hi-C experiments.

annotateHiCBin: Annotate Hi-C bins with genomic feature data.

Description

Usage

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Value