get_all_chr_names

It retrieves all chromosome names having longer than 2.5Mbp.

Identifies chromatin interaction modules by constructing a Hi-C contact network based on statistically significant interactions, followed by network clustering. The method enables comparison of module connectivity across two Hi-C datasets and is capable of detecting cell-type-specific regulatory modules. By integrating network analysis with chromatin conformation data, this approach provides insights into the spatial organization of the genome and its functional implications in gene regulation. Author: Sora Yoon (2025) <https://github.com/ysora/HiCociety>.

Sora Yoon

HiCociety

Inferring Chromatin Interaction Modules from 3C-Based Data

get_all_chr_names function

<dl><dt>fname</dt>
<dd>Path to .hic file</dd></dl>

Arguments

Author

Retrieve chromosome names from .hic file — get_all_chr_names

<dl>

<dt>fname</dt>
<dd>Path to .hic file</dd>

</dl>

get_all_chr_names: Retrieve chromosome names from .hic file

Description

Usage

Value

Arguments

Author

Details

Examples