get_example_hic_file

This function downloads an example Hi-C file from chromosome 19 of mice (mm10) Th1 cells.

Identifies chromatin interaction modules by constructing a Hi-C contact network based on statistically significant interactions, followed by network clustering. The method enables comparison of module connectivity across two Hi-C datasets and is capable of detecting cell-type-specific regulatory modules. By integrating network analysis with chromatin conformation data, this approach provides insights into the spatial organization of the genome and its functional implications in gene regulation. Author: Sora Yoon (2025) <https://github.com/ysora/HiCociety>.

Sora Yoon

HiCociety

Inferring Chromatin Interaction Modules from 3C-Based Data

get_example_hic_file function

<dl><dt>destfile</dt>
<dd>Path to save the example Hi-C file</dd></dl>

Arguments

Example download — get_example_hic_file

<dl>

<dt>destfile</dt>
<dd>Path to save the example Hi-C file</dd>

</dl>

get_example_hic_file: Example download

Description

Usage

Value

Arguments