HiCociety (version 0.1.39)

hic2network: HiC to network data format

Description

It converts Hi-C dataframe to network object.

Usage

hic2network(ftab)

Value

An igraph object representing statistically significant chromatin interactions.

Arguments

ftab

three-column data composed of locus1, locus2 and value

Author

Sora Yoon, PhD

Details

Convert HiC to network data format

Examples

# This example might take a long time to run, so we wrap it in donttest{}
# \donttest{
myhic=system.file('extdata', 'example.hic', package ='HiCocietyExample')
ftab=getContactFrequency(myhic,19,5000);
net = hic2network(ftab[1:100,]);
plot(net)
# }