Hmisc v4.0-3

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Harrell Miscellaneous

Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, and recoding variables.

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Hmisc

Harrell Miscellaneous

Current Goals

Web Sites

To Do

  • Consider using the haven package for importing SAS, Stata, and SPSS files; haven stores labels as the label attribute of each variable as does Hmisc; it converts date and time variables automatically and allows one to specify a format catalog along with the primary dataset
  • See if the readstata13 package has advantages over the foreign package for Stata file import
  • Consider creating xl.get using the readxl package to read .xls and .xlsx Excel files
  • In impute.transcan, sense if a variable in data is not a factor whereas it was treated as a factor during aregImpute; it should be converted to factor before the line v[sub] <- ... levels(as.integer...)) is run

Functions in Hmisc

Name Description
Misc Miscellaneous Functions
HmiscOverview Overview of Hmisc Library
Cs Character strings from unquoted names
Ecdf Empirical Cumulative Distribution Plot
GiniMd Gini's Mean Difference
Hmisc-internal Internal Hmisc functions
Save Faciliate Use of save and load to Remote Directories
abs.error.pred Indexes of Absolute Prediction Error for Linear Models
aregImpute Multiple Imputation using Additive Regression, Bootstrapping, and Predictive Mean Matching
biVar Bivariate Summaries Computed Separately by a Series of Predictors
binconf Confidence Intervals for Binomial Probabilities
bootkm Bootstrap Kaplan-Meier Estimates
curveRep Representative Curves
cut2 Cut a Numeric Variable into Intervals
approxExtrap Linear Extrapolation
areg Additive Regression with Optimal Transformations on Both Sides using Canonical Variates
bpower Power and Sample Size for Two-Sample Binomial Test
bpplot Box-percentile plots
consolidate Element Merging
contents Metadata for a Data Frame
bystats Statistics by Categories
capitalize capitalize the first letter of a string
discrete Discrete Vector tools
dotchart2 Enhanced Dot Chart
ciapower Power of Interaction Test for Exponential Survival
cnvrt.coords Convert between the 5 different coordinate sytems on a graphical device
find.matches Find Close Matches
first.word First Word in a String or Expression
colorFacet Miscellaneous ggplot2 and grid Helper Functions
ggfreqScatter Frequency Scatterplot
dotchart3 Enhanced Version of dotchart Function
dotchartpl Enhanced Version of dotchart Function for plotly
event.chart Flexible Event Chart for Time-to-Event Data
event.convert Event Conversion for Time-to-Event Data
impute Generic Functions and Methods for Imputation
inc-dec Increment and Decrement
mChoice Methods for Storing and Analyzing Multiple Choice Variables
makeNstr creates a string that is a repeat of a substring
gbayes Gaussian Bayesian Posterior and Predictive Distributions
getHdata Download and Install Datasets for Hmisc, rms, and Statistical Modeling
knitrSet knitr Setup and plotly Service Function
labcurve Label Curves, Make Keys, and Interactively Draw Points and Curves
getRs Interact with github rscripts Project
getZip Open a Zip File From a URL.
latexDotchart Enhanced Dot Chart for LaTeX Picture Environment with epic
latexTabular Convert a Data Frame or Matrix to a LaTeX Tabular
Lag Lag a Numeric, Character, or Factor Vector
Merge Merge Multiple Data Frames or Data Tables
addMarginal Add Marginal Observations
all.is.numeric Check if All Elements in Character Vector are Numeric
deff Design Effect and Intra-cluster Correlation
describe Concise Statistical Description of a Vector, Matrix, Data Frame, or Formula
errbar Plot Error Bars
cpower Power of Cox/log-rank Two-Sample Test
csv.get Read Comma-Separated Text Data Files
data.frame.create.modify.check Tips for Creating, Modifying, and Checking Data Frames
dataRep Representativeness of Observations in a Data Set
event.history Produces event.history graph for survival data
mhgr Miscellaneous Functions for Epidemiology
equalBins Multicolumn Formating
format.df Format a Data Frame or Matrix for LaTeX or HTML
nstr Creates a string of arbitry length
num.intercepts Extract number of intercepts
pstamp Date/Time/Directory Stamp the Current Plot
rMultinom Generate Multinomial Random Variables with Varying Probabilities
latexTherm Create LaTeX Thermometers and Colored Needles
legendfunctions Legend Creation Functions
%nin% Find Matching (or Non-Matching) Elements
nobsY Compute Number of Observations for Left Hand Side of Formula
ffCompress Transform Data Frame Into a Compact ff Object
histbackback Back to Back Histograms
histboxp Use plotly to Draw Stratified Spike Histogram and Box Plot Statistics
panel.bpplot Box-Percentile Panel Function for Trellis
plsmo Plot smoothed estimates
popower Power and Sample Size for Ordinal Response
rcspline.plot Plot Restricted Cubic Spline Function
rcspline.restate Re-state Restricted Cubic Spline Function
format.pval Format P Values
hoeffd Matrix of Hoeffding's D Statistics
html Convert an S object to HTML
minor.tick Minor Tick Marks
scat1d One-Dimensional Scatter Diagram, Spike Histogram, or Density
score.binary Score a Series of Binary Variables
somers2 Somers' Dxy Rank Correlation
spower Simulate Power of 2-Sample Test for Survival under Complex Conditions
partition Patitions an object into different sets
print.char.list prints a list of lists in a visually readable format.
print.char.matrix Function to print a matrix with stacked cells
rcorr Matrix of Correlations and P-values
rcorr.cens Rank Correlation for Censored Data
showPsfrag Display image from psfrag LaTeX strings
simplifyDims List Simplification
stringDims String Dimentions
summaryM Summarize Mixed Data Types vs. Groups
summaryP Multi-way Summary of Proportions
transcan Transformations/Imputations using Canonical Variates
translate Translate Vector or Matrix of Text Strings
list.tree Pretty-print the Structure of a Data Object
mApply Apply a Function to Rows of a Matrix or Vector
reShape Reshape Matrices and Serial Data
redun Redundancy Analysis
sedit Character String Editing and Miscellaneous Character Handling Functions
show.pch Display Colors, Plotting Symbols, and Symbol Numeric Equivalents
escapeRegex Escapes any characters that would have special meaning in a reqular expression.
hdquantile Harrell-Davis Distribution-Free Quantile Estimator
hist.data.frame Histograms for Variables in a Data Frame
multLines Plot Multiple Lines
subplot Embed a new plot within an existing plot
t.test.cluster t-test for Clustered Data
tabulr Interface to Tabular Function
sas.get Convert a SAS Dataset to an S Data Frame
label Label Attribute of an Object
latex Convert an S object to LaTeX, and Related Utilities
mdb.get Read Tables in a Microsoft Access Database
upData Update a Data Frame or Cleanup a Data Frame after Importing
wtd.stats Weighted Statistical Estimates
xYplot xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
mtitle Margin Titles
na.detail.response Detailed Response Variable Information
na.keep Do-nothing na.action
mgp.axis Draw Axes With Side-Specific mgp Parameters
samplesize.bin Sample Size for 2-sample Binomial
sasxport.get Enhanced Importing of SAS Transport Files using read.xport
stat_plsmo Add a lowess smoother without counfidence bands.
stata.get Enhanced Importing of STATA Files
summarize Summarize Scalars or Matrices by Cross-Classification
summary.formula Summarize Data for Making Tables and Plots
string.bounding.box Determine Dimensions of Strings
string.break.line Break a String into Many Lines at Newlines
trunc.POSIXt return the floor, ceiling, or rounded value of date or time to specified unit.
na.delete Row-wise Deletion na.action
pc1 First Principal Component
plotCorrPrecision Plot Precision of Estimate of Pearson Correlation Coefficient
rcorrp.cens Rank Correlation for Paired Predictors with a Possibly Censored Response, and Integrated Discrimination Index
units Units Attribute of a Vector
xtfrm.labelled Auxiliary Function Method for Sorting and Ranking
xy.group Mean x vs. function of y in groups of x
prnz Print and Object with its Name
prselect Selectively Print Lines of a Text Vector
rlegend Special Version of legend for R
rm.boot Bootstrap Repeated Measurements Model
spss.get Enhanced Importing of SPSS Files
rcspline.eval Restricted Cubic Spline Design Matrix
smean.sd Compute Summary Statistics on a Vector
solvet solve Function with tol argument
symbol.freq Graphic Representation of a Frequency Table
varclus Variable Clustering
sys Run Unix or Dos Depending on System
upFirst Change First Letters to Upper Case
valueTags Store Discriptive Information About an Object
src Source a File from the Current Working Directory
summaryRc Graphical Summarization of Continuous Variables Against a Response
summaryS Summarize Multiple Response Variables and Make Multipanel Scatter or Dot Plot
tex function for use in graphs that are used with the psfrag package in LaTeX
transace Additive Regression and Transformations using ace or avas
yearDays Get Number of Days in Year or Month
ynbind Combine Variables in a Matrix
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Details

Date 2017-04-30
License GPL (>= 2)
LazyLoad Yes
URL http://biostat.mc.vanderbilt.edu/Hmisc, https://github.com/harrelfe/Hmisc
NeedsCompilation yes
Packaged 2017-05-01 18:00:23 UTC; harrelfe
Repository CRAN
Date/Publication 2017-05-02 06:31:42 UTC

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