Hmisc v4.2-0

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Harrell Miscellaneous

Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, and recoding variables.

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Hmisc

Harrell Miscellaneous

Current Goals

Web Sites

To Do

  • Consider using the haven package for importing SAS, Stata, and SPSS files; haven stores labels as the label attribute of each variable as does Hmisc; it converts date and time variables automatically and allows one to specify a format catalog along with the primary dataset
  • See if the readstata13 package has advantages over the foreign package for Stata file import
  • Consider creating xl.get using the readxl package to read .xls and .xlsx Excel files
  • In impute.transcan, sense if a variable in data is not a factor whereas it was treated as a factor during aregImpute; it should be converted to factor before the line v[sub] <- ... levels(as.integer...)) is run

Functions in Hmisc

Name Description
Merge Merge Multiple Data Frames or Data Tables
Hmisc-internal Internal Hmisc functions
Lag Lag a Numeric, Character, or Factor Vector
abs.error.pred Indexes of Absolute Prediction Error for Linear Models
GiniMd Gini's Mean Difference
Save Faciliate Use of save and load to Remote Directories
Ecdf Empirical Cumulative Distribution Plot
bpower Power and Sample Size for Two-Sample Binomial Test
aregImpute Multiple Imputation using Additive Regression, Bootstrapping, and Predictive Mean Matching
addMarginal Add Marginal Observations
bpplot Box-percentile plots
consolidate Element Merging
contents Metadata for a Data Frame
approxExtrap Linear Extrapolation
areg Additive Regression with Optimal Transformations on Both Sides using Canonical Variates
curveRep Representative Curves
all.is.numeric Check if All Elements in Character Vector are Numeric
biVar Bivariate Summaries Computed Separately by a Series of Predictors
cut2 Cut a Numeric Variable into Intervals
bystats Statistics by Categories
ciapower Power of Interaction Test for Exponential Survival
event.convert Event Conversion for Time-to-Event Data
event.chart Flexible Event Chart for Time-to-Event Data
capitalize capitalize the first letter of a string
discrete Discrete Vector tools
cnvrt.coords Convert between the 5 different coordinate sytems on a graphical device
HmiscOverview Overview of Hmisc Library
dotchart2 Enhanced Dot Chart
find.matches Find Close Matches
binconf Confidence Intervals for Binomial Probabilities
first.word First Word in a String or Expression
dotchart3 Enhanced Version of dotchart Function
dotchartpl Enhanced Version of dotchart Function for plotly
deff Design Effect and Intra-cluster Correlation
errbar Plot Error Bars
bootkm Bootstrap Kaplan-Meier Estimates
describe Concise Statistical Description of a Vector, Matrix, Data Frame, or Formula
event.history Produces event.history graph for survival data
hdquantile Harrell-Davis Distribution-Free Quantile Estimator
mhgr Miscellaneous Functions for Epidemiology
escapeRegex Escapes any characters that would have special meaning in a reqular expression.
getRs Interact with github rscripts Project
latexCheckOptions Check whether the options for latex functions have been specified.
latexDotchart Enhanced Dot Chart for LaTeX Picture Environment with epic
equalBins Multicolumn Formating
ffCompress Transform Data Frame Into a Compact ff Object
colorFacet Miscellaneous ggplot2 and grid Helper Functions
mgp.axis Draw Axes With Side-Specific mgp Parameters
minor.tick Minor Tick Marks
cpower Power of Cox/log-rank Two-Sample Test
csv.get Read Comma-Separated Text Data Files
na.keep Do-nothing na.action
getZip Open a Zip File From a URL.
gbayes Gaussian Bayesian Posterior and Predictive Distributions
ggfreqScatter Frequency Scatterplot
hidingTOC Moving and Hiding Table of Contents
%nin% Find Matching (or Non-Matching) Elements
histboxp Use plotly to Draw Stratified Spike Histogram and Box Plot Statistics
html Convert an S object to HTML
impute Generic Functions and Methods for Imputation
mApply Apply a Function to Rows of a Matrix or Vector
getHdata Download and Install Datasets for Hmisc, rms, and Statistical Modeling
mChoice Methods for Storing and Analyzing Multiple Choice Variables
partition Patitions an object into different sets
pc1 First Principal Component
hoeffd Matrix of Hoeffding's D Statistics
legendfunctions Legend Creation Functions
list.tree Pretty-print the Structure of a Data Object
latexTabular Convert a Data Frame or Matrix to a LaTeX Tabular
data.frame.create.modify.check Tips for Creating, Modifying, and Checking Data Frames
dataRep Representativeness of Observations in a Data Set
knitrSet knitr Setup and plotly Service Function
mtitle Margin Titles
rcspline.plot Plot Restricted Cubic Spline Function
labcurve Label Curves, Make Keys, and Interactively Draw Points and Curves
rcspline.restate Re-state Restricted Cubic Spline Function
plotCorrPrecision Plot Precision of Estimate of Pearson Correlation Coefficient
latexTherm Create LaTeX Thermometers and Colored Needles
multLines Plot Multiple Lines
nobsY Compute Number of Observations for Left Hand Side of Formula
print.char.list prints a list of lists in a visually readable format.
nstr Creates a string of arbitry length
samplesize.bin Sample Size for 2-sample Binomial
sasxport.get Enhanced Importing of SAS Transport Files using read.xport
format.df Format a Data Frame or Matrix for LaTeX or HTML
print.char.matrix Function to print a matrix with stacked cells
rcorr Matrix of Correlations and P-values
plotlyM plotly Multiple
makeNstr creates a string that is a repeat of a substring
format.pval Format P Values
reShape Reshape Matrices and Serial Data
spower Simulate Power of 2-Sample Test for Survival under Complex Conditions
redun Redundancy Analysis
spss.get Enhanced Importing of SPSS Files
rcorr.cens Rank Correlation for Censored Data
mdb.get Read Tables in a Microsoft Access Database
num.intercepts Extract number of intercepts
panel.bpplot Box-Percentile Panel Function for Trellis
summary.formula Summarize Data for Making Tables and Plots
plsmo Plot smoothed estimates
simplifyDims List Simplification
popower Power and Sample Size for Ordinal Response
sedit Character String Editing and Miscellaneous Character Handling Functions
smean.sd Compute Summary Statistics on a Vector
pstamp Date/Time/Directory Stamp the Current Plot
rMultinom Generate Multinomial Random Variables with Varying Probabilities
showPsfrag Display image from psfrag LaTeX strings
scat1d One-Dimensional Scatter Diagram, Spike Histogram, or Density
simRegOrd Simulate Power for Adjusted Ordinal Regression Two-Sample Test
summaryM Summarize Mixed Data Types vs. Groups
score.binary Score a Series of Binary Variables
ynbind Combine Variables in a Matrix
summaryS Summarize Multiple Response Variables and Make Multipanel Scatter or Dot Plot
hist.data.frame Histograms for Variables in a Data Frame
histbackback Back to Back Histograms
symbol.freq Graphic Representation of a Frequency Table
label Label Attribute of an Object
translate Translate Vector or Matrix of Text Strings
trunc.POSIXt Return the floor, ceiling, or rounded value of date or time to specified unit.
show.pch Display Colors, Plotting Symbols, and Symbol Numeric Equivalents
sys Run Unix or Dos Depending on System
upFirst Change First Letters to Upper Case
t.test.cluster t-test for Clustered Data
valueTags Store Discriptive Information About an Object
solvet solve Function with tol argument
latex Convert an S object to LaTeX, and Related Utilities
na.delete Row-wise Deletion na.action
xYplot xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
na.detail.response Detailed Response Variable Information
xtfrm.labelled Auxiliary Function Method for Sorting and Ranking
somers2 Somers' Dxy Rank Correlation
src Source a File from the Current Working Directory
stat_plsmo Add a lowess smoother without counfidence bands.
string.break.line Break a String into Many Lines at Newlines
stringDims String Dimentions
tabulr Interface to Tabular Function
subplot Embed a new plot within an existing plot
summarize Summarize Scalars or Matrices by Cross-Classification
tex function for use in graphs that are used with the psfrag package in LaTeX
prnz Print and Object with its Name
prselect Selectively Print Lines of a Text Vector
transace Additive Regression and Transformations using ace or avas
rcorrp.cens Rank Correlation for Paired Predictors with a Possibly Censored Response, and Integrated Discrimination Index
rcspline.eval Restricted Cubic Spline Design Matrix
rlegend Special Version of legend for R
transcan Transformations/Imputations using Canonical Variates
rm.boot Bootstrap Repeated Measurements Model
xy.group Mean x vs. function of y in groups of x
yearDays Get Number of Days in Year or Month
stata.get Enhanced Importing of STATA Files
string.bounding.box Determine Dimensions of Strings
summaryP Multi-way Summary of Proportions
summaryRc Graphical Summarization of Continuous Variables Against a Response
units Units Attribute of a Vector
upData Update a Data Frame or Cleanup a Data Frame after Importing
varclus Variable Clustering
wtd.stats Weighted Statistical Estimates
Misc Miscellaneous Functions
Cs Character strings from unquoted names
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Details

Date 2019-01-25
License GPL (>= 2)
LazyLoad Yes
URL http://biostat.mc.vanderbilt.edu/Hmisc, https://github.com/harrelfe/Hmisc
Encoding UTF-8
RoxygenNote 6.1.1
NeedsCompilation yes
Packaged 2019-01-25 22:28:42 UTC; harrelfe
Repository CRAN
Date/Publication 2019-01-26 23:20:03 UTC

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