helper_collapseTableByLevenSim

Reads in a table and value for Levenshtein threshold and returns a table collapsed by threshold (highest p-value for each group)

Built by Hodges lab members for current and future Hodges lab members. Other individuals are welcome to use as well. Provides useful functions that the lab uses everyday to analyze various genomic datasets. Critically, only general use functions are provided; functions specific to a given technique are reserved for a separate package. As the lab grows, we expect to continue adding functions to the package to build on previous lab members code.

Tyler Hansen

HodgesTools

Common Use Tools for Genomic Analysis

Tim Scott

Lindsey Guerin

Verda Agan

Emily Hodges

helper_collapseTableByLevenSim function

<dl><dt>inputTable</dt>
<dd>dataframe. HOMER output table modified in the parent script--ready for filtering by Levenshtein similarity.</dd>
<dt>levenSimThresholdVal</dt>
<dd>float. Value for thresholding TFs. For groups of TFs with similar consensus sequences, the TF with the lowest p-value by HOMER will be retained.</dd></dl>

Arguments

Author

helper_collapseTableByLevenSim — helper_collapseTableByLevenSim

<dl>

<dt>inputTable</dt>
<dd>dataframe. HOMER output table modified in the parent script--ready for filtering by Levenshtein similarity.</dd>


<dt>levenSimThresholdVal</dt>
<dd>float. Value for thresholding TFs. For groups of TFs with similar consensus sequences, the TF with the lowest p-value by HOMER will be retained.</dd>

</dl>

helper_collapseTableByLevenSim: helper_collapseTableByLevenSim

Description

Usage

Value

Arguments

Author