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HybridMicrobiomes (version 0.1.1)

Analysis of Host-Associated Microbiomes from Hybrid Organisms

Description

A set of tools to analyze and visualize the relationships between host-associated microbiomes of hybrid organisms and those of their progenitor species. Though not necessary, installing the microViz package is recommended as a check for phyloseq objects. To install microViz from R Universe use the following command: install.packages("microViz", repos = c(davidbarnett = "https://david-barnett.r-universe.dev", getOption("repos"))). To install microViz from GitHub use the following commands: install.packages("devtools") followed by devtools::install_github("david-barnett/microViz").

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Version

Install

install.packages('HybridMicrobiomes')

Monthly Downloads

156

Version

0.1.1

License

GPL-2

Maintainer

Sharon Bewick

Last Published

December 5th, 2023

Functions in HybridMicrobiomes (0.1.1)

FourHbootstrapA

Bootstraps of the abundance-based 4H Index
FourHbootstrap

Bootstraps of the incidence-based 4H Index
FourHquaternary

Plot bootstrapped 4H-indices
FourHnullplaneD

Bootstrap Distribution Around the Null Plane
FourHnull

Bootstrapped null models of the 4H-index
FourHcentroid

Centroid of bootstrapped 4H-indices
FourHcompare

Tests whether multiple systems have significantly different 4H-indices
FourHpreanalysis

Bootstraps of the percentage of gamma diversity that is core
FourHquaternaryC

Plot centroid of bootstrapped 4H-indices
FourHnullplane

Null Plane