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IBDsim (version 0.9-8)

Simulation of Chromosomal Regions Shared by Family Members

Description

Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Kong et. al (2010) ), phased chromosomes are simulated for all pedigree members, either by unconditional gene dropping or conditional on a specified IBD pattern. Additional functions provide summaries and further analysis of the simulated genomes.

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Version

Install

install.packages('IBDsim')

Monthly Downloads

72

Version

0.9-8

License

GPL (>= 2)

Maintainer

Magnus Vigeland

Last Published

April 6th, 2019

Functions in IBDsim (0.9-8)

oneLocusJacquard

Estimating Jacquard's condensed identity coefficients
oneLocusIBD

Estimating pairwise IBD coefficients
alleleSummary

Allele sharing summary
twoLocusIBD

Estimating two-locus IBD coefficients
twoLocusJacquard

Estimating two-locus Jacquard coefficients
dominant1

Autosomal dominant pedigree
DecodeMap

Decode recombination map
IBDsim

IBD simulation