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IBRtools

The IBRtools package calculates two important indexes IBR (Integrated Biomarker Response) and IBRv2 (Integrated Biological Response version 2), it also calculates the intermediate values for enzyme activity for each index, and it has a graphing function to perform radarplots that make great data visualization for this type of data!

How to install

# install.packages("devtools")
# library(devtools)
Sys.setenv("R_REMOTES_NO_ERRORS_FROM_WARNINGS"=TRUE) #this is so warnings don't turn into errors
devtools::install_github("ecologicaltools/IBRtools")
library(IBRtools)

2) Downloading the zip version from this repository

Code -> Download zip -> Unzip it in your computer and open the directory IBRtools -> run the code devtools::install() -> update the packages as requested

3) "It's still not working"

Don't worry, it might be a version problem. You could simply create a free account in RStudio Cloud

(The simpler is just use it in Rstudio Cloud and then export the files you want to save in your computer later on)

If you still come across a new issue, please report it so we can fix it ASAP.

Thanks for using our functions, don't forget to cite!

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Version

Install

install.packages('IBRtools')

Monthly Downloads

243

Version

0.1.3

License

GPL-3

Maintainer

Anna Carolina Resende

Last Published

August 14th, 2023

Functions in IBRtools (0.1.3)

ibr_std

Standardized values for IBR (Integrated Biomarker Response) index
ibrv2_bdi

Standardized values for IBRv2 (Integrated Biological Responses version 2)
enzact2

Biomarkers activity values with different treatments
enzact_coef

Coefficient values for each biomarker within different treatments
ibrv2_chart

IBRv2 Radarchart
IBRtools

'IBRtools': Integrating Biomarker-Based Assessments and Radarchart Creation
enzact

Biomarkers activity values with different treatments
ibrv2_index

IBRv2 (Integrated Biological Responses version 2)
ibr_index

IBR (Integrated Biomarker Response) index
ibr_chart

IBR Radarchart