ICAMS (version 2.0.7)

Canonicalize1DEL: Given a deletion and its sequence context, categorize it.

Description

Given a deletion and its sequence context, categorize it.

Usage

Canonicalize1DEL(context, del.seq, pos, trace = 0)

Arguments

context

The deleted sequence plus ample surrounding sequence on each side (at least as long as del.seq).

del.seq

The deleted sequence in context.

pos

The position of del.sequence in context.

trace

If > 0 cat information how the computation is carried out.

Value

A string that is the canonical representation of the given deletion type