Create double base catalog for *one* sample from a Variant Call Format (VCF) file
CreateOneColDBSMatrix(vcf, trans.ranges = NULL, sample.id = "count")
An in-memory VCF file annotated by the AddSeqContext and AddTranscript functions. It must *not* contain indels and must *not* contain SBS (single base substitutions), or triplet base substitutions etc.
A data.table
which contains
transcript range and strand information. Please refer to
TranscriptRanges
for more details.
Usually the sample id, but defaults to "count".
A list of three 1-column matrices with the names
catDBS78
, catDBS144
, and catDBS136
.
If trans.ranges is NULL, catDBS144
is
not generated. Do not rely on the order of elements
in the list.