ICAMS (version 2.0.7)

CreatePPMFromSBSVCFs: Create position probability matrices (PPM) from a list of SBS vcfs

Description

Create position probability matrices (PPM) from a list of SBS vcfs

Usage

CreatePPMFromSBSVCFs(list.of.SBS.vcfs, ref.genome, seq.context.width)

Arguments

list.of.SBS.vcfs

List of in-memory data frames of pure SBS mutations -- no DBS or 3+BS mutations.

ref.genome

A ref.genome argument as described in ICAMS.

seq.context.width

The number of preceding and following bases to be extracted around the mutated position from ref.genome.

Value

A list of position probability matrices (PPM).