Generate k-mer abundance from a given genome
GetGenomeKmerCounts(k, ref.genome, filter.path, verbose = FALSE)
Length of k-mers (k>=2)
A ref.genome
argument as described in
ICAMS
.
If given, homopolymers will be masked from genome(sequence). Only simple repeat masking is accepted now.
If TRUE
, generate progress messages.
Matrix of the counts of each k-mer across the ref.genome