Read and split Strelka SBS VCF files.
ReadAndSplitStrelkaSBSVCFs(files)
Character vector of file paths to the Strelka SBS VCF files.
A list of 3 in-memory objects as follows:
SBS.vcfs List of data.frames of pure SBS mutations -- no DBS or 3+BS mutations.
SBS.vcfs
DBS.vcfs List of data.frames of pure DBS mutations -- no SBS or 3+BS mutations.
DBS.vcfs
ThreePlus List of data.tables with the key CHROM, LOW.POS, HIGH.POS. containing rows that that in the input that did not represent SBSs or DBSs.
ThreePlus
StrelkaSBSVCFFilesToCatalog
# NOT RUN { file <- c(system.file("extdata", "Strelka.SBS.GRCh37.vcf", package = "ICAMS")) list.of.vcfs <- ReadAndSplitStrelkaSBSVCFs(file) # }
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