TestMakeCatalogFromStrelkaSBSVCFs

<p>This function is to make catalogs from the sample Strelka SBS VCF files
to compare with the expected catalog information.</p>

internal

Analysis and visualization of experimentally elucidated mutational
signatures -- the kind of analysis and visualization in Boot et al.,
"In-depth characterization of the cisplatin mutational signature in
human cell lines and in esophageal and liver tumors", Genome Research 2018,
<doi:10.1101/gr.230219.117>. 'ICAMS' stands for In-depth Characterization
and Analysis of Mutational Signatures. 'ICAMS' has functions to read in
variant call files (VCFs) and to collate the corresponding catalogs of
mutational spectra and to analyze and plot catalogs of mutational spectra
and signatures. Handles both "counts-based" and "density-based" catalogs
of mutational spectra or signatures.

Steve Rozen

ICAMS

In-depth Characterization and Analysis of Mutational Signatures
('ICAMS')

TestMakeCatalogFromStrelkaSBSVCFs function

This function is to make catalogs from the sample Strelka SBS VCF files
to compare with the expected catalog information. — TestMakeCatalogFromStrelkaSBSVCFs

TestMakeCatalogFromStrelkaSBSVCFs: This function is to make catalogs from the sample Strelka SBS VCF files to compare with the expected catalog information.

Description

Usage

Arguments