ICAMS (version 3.0.11)

GetMutationLoadsFromStrelkaSBSVCFs: Get mutation loads information from Strelka SBS VCF files.

Description

Get mutation loads information from Strelka SBS VCF files.

Usage

GetMutationLoadsFromStrelkaSBSVCFs(catalogs)

Value

A list containing mutation loads information from Strelka SBS VCF files:

1. total.variants Total number of mutations.

2. SBS Number of single base substitutions.

3. DBS Number of double base substitutions.

4. ID Number of small insertions and deletions.

5. discarded.variants Number of other types of mutations which are excluded in the analysis in ICAMS.

Arguments

catalogs

A list generated by calling function StrelkaSBSVCFFilesToCatalog to Strelka SBS VCF files.