ICAMS (version 3.0.11)

ReadDukeNUSCat192: Read a 192-channel spectra (or signature) catalog in Duke-NUS format

Description

WARNING: will not work with region = "genome". For this you must first read with region = "unknown", then convert the cat96 return to "genome" and ignore the cat192 return, which is nonsensical.

Usage

ReadDukeNUSCat192(
  file,
  ref.genome = NULL,
  region = "unknown",
  catalog.type = "counts",
  abundance = NULL
)

Value

A list with two elements

Details

The file needs to have the column names Before Ref After Var in the first 4 columns