ICAMS (version 3.0.11)

ReadStrelkaIDVCFs: [Deprecated, use ReadAndSplitVCFs(variant.caller = "strelka") instead] Read Strelka ID (small insertions and deletions) VCF files

Description

[Deprecated, use ReadAndSplitVCFs(variant.caller = "strelka") instead] Read Strelka ID (small insertions and deletions) VCF files

Usage

ReadStrelkaIDVCFs(files, names.of.VCFs = NULL)

Value

A list of data frames containing data lines of the VCF files.

Arguments

files

Character vector of file paths to the VCF files.

names.of.VCFs

Character vector of names of the VCF files. The order of names in names.of.VCFs should match the order of VCF file paths in files. If NULL(default), this function will remove all of the path up to and including the last path separator (if any) in files and file paths without extensions (and the leading dot) will be used as the names of the VCF files.

See Also

StrelkaIDVCFFilesToCatalog

Examples

if (FALSE) {
file <- c(system.file("extdata/Strelka-ID-vcf",
                      "Strelka.ID.GRCh37.s1.vcf",
                      package = "ICAMS"))
list.of.vcfs <- ReadStrelkaIDVCFs(file)
}