ICDS (version 0.1.3)

PlotSubpathway: PlotSubpathway

Description

PlotSubpathway:plot a network graph when user input a list of gene

Usage

PlotSubpathway(
  subpID,
  pathway.name,
  zz,
  Pathway = "kegg",
  layout = layout.fruchterman.reingold
)

Value

Network graph

Arguments

subpID

gene list of a interested subpathway

pathway.name

name of the interested subpathway

zz

z-score of each gene

Pathway

the name of the pathway database

layout

The layout specification(layout_). It must be a call to a layout specification function.

Examples

require(graphite)

subpID<-unlist(strsplit("ACSS1/ALDH3B2/ADH1B/ADH1A/ALDH2/DLAT/ACSS2","/"))
pathway.name="Glycolysis / Gluconeogenesis"
zzz<- GetExampleData("zzz")
PlotSubpathway(subpID=subpID,pathway.name=pathway.name,zz=zzz)