ICSClust (version 0.1.1)

select_plot: Plot of the Generalized Kurtosis Values of the ICS Transformation

Description

Extracts the generalized kurtosis values of the components obtained via an ICS transformation and draws either a screeplot or a specific plot for a given criterion. If an object of class "ICS_crit" is given, then the selected components are shaded on the plot.

Usage

select_plot(object, ...)
# S3 method for default
select_plot(
  object,
  select = NULL,
  scale = FALSE,
  screeplot = TRUE,
  type = c("dots", "lines"),
  width = 0.2,
  color = "grey",
  alpha = 0.3,
  size = 3,
  ...
)
# S3 method for data.frame
select_plot(
  object,
  type = c("dots", "lines"),
  width = 0.2,
  color = "grey",
  alpha = 0.3,
  ...
)
# S3 method for ICS_crit
select_plot(
  object,
  type = c("dots", "lines"),
  width = 0.2,
  color = "grey",
  alpha = 0.3,
  size = 3,
  screeplot = TRUE,
  ...
)

Value

An object of class "ggplot" (see ggplot2::ggplot()).

Arguments

object

an object inheriting from class "ICS" and containing results from an ICS transformation or from class "ICS_crit".

...

additional arguments are currently ignored.

select

an integer, character, or logical vector specifying for which components to extract the generalized kurtosis values, or NULL for extracting the generalized kurtosis values of all components.

scale

a logical indicating whether to scale the generalized kurtosis values to have product 1 (defaults to FALSE).

screeplot

boolean. If TRUE a plot of the generalized kurtosis values is drawn. Otherwise it is context specific to the ICS_crit object. For "med" criterion, the differences between the kurtosis values and the median are plotted in absolute values. For "discriminatory" the discriminatory power associated to the evaluated combinations are drawn.

type

either "dots" or "lines" for the type of plot.

width

the width for shading the selected components in case an ICS_crit object is given.

color

the color for shading the selected components in case an ICS_crit object is given.

alpha

the transparency for shading the selected components in case an ICS_crit object is given.

size

size of the points. Only relevant for "discriminatory" criteria.

Author

Andreas Alfons and Aurore Archimbaud

Examples

X <- iris[,-5]
out <- ICS(X)

# on an ICS object
select_plot(out)
select_plot(out, type = "lines")

# on an ICS_crit object 
# median criterion
out_med <- med_crit(out, nb_select = 1, select_only = FALSE)
select_plot(out_med, type = "lines")
select_plot(out_med, screeplot = FALSE, type = "lines", 
color = "lightblue")

# discriminatory criterion
out_disc <- discriminatory_crit(out, clusters = iris[,5], 
 select_only = FALSE)
select_plot(out_disc)