parse_gdc_file_uuid

Parse Sample ID from GDC Portal File UUID

Identifiers in biological databases connect different levels
of metadata, phenotype data or genotype data. This tool is designed to
easily convert identifiers within or between different biological
databases (Wang, Shixiang, et al. (2021) <DOI:10.1371/journal.pgen.1009557>).

Shixiang Wang

IDConverter

Convert Identifiers in Biological Databases

parse_gdc_file_uuid function

<dl><dt>x</dt>
<dd>a GDC manifest file or a vector of file UUIDs.</dd>
<dt>legacy</dt>
<dd>if use GDC legacy data.</dd>
<dt>fields</dt>
<dd>a list of fields to query.
If it is a string, then fields should be separated by comma.
It could also be a vector.
See <a href="https://docs.gdc.cancer.gov/API/Users_Guide/Appendix_A_Available_Fields/#file-fields">https://docs.gdc.cancer.gov/API/Users_Guide/Appendix_A_Available_Fields/#file-fields</a>
for list.</dd>
<dt>token</dt>
<dd>the token used for querying.</dd>
<dt>max_try</dt>
<dd>maximum try time.</dd></dl>

Arguments

Parse Sample ID from GDC Portal File UUID — parse_gdc_file_uuid

<dl>

<dt>x</dt>
<dd>a GDC manifest file or a vector of file UUIDs.</dd>


<dt>legacy</dt>
<dd>if use GDC legacy data.</dd>


<dt>fields</dt>
<dd>a list of fields to query.
If it is a string, then fields should be separated by comma.
It could also be a vector.
See <a href='https://docs.gdc.cancer.gov/API/Users_Guide/Appendix_A_Available_Fields/#file-fields'>https://docs.gdc.cancer.gov/API/Users_Guide/Appendix_A_Available_Fields/#file-fields</a>
for list.</dd>


<dt>token</dt>
<dd>the token used for querying.</dd>


<dt>max_try</dt>
<dd>maximum try time.</dd>

</dl>

parse_gdc_file_uuid: Parse Sample ID from GDC Portal File UUID

Description

Usage

Value

Arguments

Examples