GetGDEscore

Function "GetGDEscore" is used to calculate gene differential expression levels.

A systematic biology tool was developed to identify dysregulated miRNAs via a miRNA-miRNA interaction network. 'IDMIR' first constructed a weighted miRNA interaction network through integrating miRNA-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific-disease context, and then, it used a network propagation algorithm on the network to identify significantly dysregulated miRNAs.

Junwei Han

IDMIR

Identification of Dysregulated MiRNAs Based on MiRNA-MiRNA
Interaction Network

Xilong Zhao

Jiashuo Wu

GetGDEscore function

<dl><dt>ExpData</dt>
<dd>A gene expression profile of interest (rows are genes, columns are samples).</dd>
<dt>Label</dt>
<dd>A character vector consists of "0" and "1" which represent sample class in the gene expression profile. "0" means normal sample and "1" means disease sample.</dd></dl>

Arguments

GetGDEscore — GetGDEscore

<dl>

<dt>ExpData</dt>
<dd>A gene expression profile of interest (rows are genes, columns are samples).</dd>


<dt>Label</dt>
<dd>A character vector consists of "0" and "1" which represent sample class in the gene expression profile. "0" means normal sample and "1" means disease sample.</dd>

</dl>

GetGDEscore: GetGDEscore

Description

Usage

Value

Arguments

Examples