CSA_AlignedTable_xlsxAnalyzer

This function processes the spreadsheet of the `AlignedTable` tab to ensure the parameter inputs are consistent with the requirements of the IDSL.CSA pipeline.

A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.CSA

Composite Spectra Analysis (CSA) for High-Resolution Mass
Spectrometry Analyses

Sadjad Fakouri-Baygi

CSA_AlignedTable_xlsxAnalyzer function

<dl> <dt>spreadsheet</dt>
<dd>`AlignedTable` tab of the parameter spreadsheet</dd></dl>

Arguments

CSA Aligned Table xlsx Analyzer — CSA_AlignedTable_xlsxAnalyzer

<dl>

 <dt>spreadsheet</dt>
<dd>`AlignedTable` tab of the parameter spreadsheet</dd>

</dl>

CSA_AlignedTable_xlsxAnalyzer: CSA Aligned Table xlsx Analyzer

Description

Usage

Value

Arguments