CSA_adductAnnotator

This function updates IDSL.IPA peaklists with IDSL.CSA grouping

A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.CSA

Composite Spectra Analysis (CSA) for High-Resolution Mass
Spectrometry Analyses

Sadjad Fakouri-Baygi

CSA_adductAnnotator function

<dl> <dt>IPApeakList</dt>
<dd>IDSL.IPA peaklist</dd> <dt>CSA_peaklist</dt>
<dd>A dataframe peaklist of co-detected CSA analysis.</dd> <dt>massError</dt>
<dd>Mass accuracy in Da</dd></dl>

Arguments

CSA Adduct Annotator — CSA_adductAnnotator

<dl>

 <dt>IPApeakList</dt>
<dd>IDSL.IPA peaklist</dd>

 <dt>CSA_peaklist</dt>
<dd>A dataframe peaklist of co-detected CSA analysis.</dd>

 <dt>massError</dt>
<dd>Mass accuracy in Da</dd>

</dl>

CSA_adductAnnotator: CSA Adduct Annotator

Description

Usage

Value

Arguments