CSA_reference_xlsxAnalyzer

A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.CSA

Composite Spectra Analysis (CSA) for High-Resolution Mass
Spectrometry Analyses

Sadjad Fakouri-Baygi

CSA_reference_xlsxAnalyzer function

<dl> <dt>ref_xlsx_file</dt>
<dd>ref_xlsx_file</dd> <dt>input_path_hrms</dt>
<dd>input_path_hrms</dd> <dt>PARAM</dt>
<dd>PARAM</dd> <dt>PARAM_ID</dt>
<dd>PARAM_ID</dd> <dt>checkpoint_parameter</dt>
<dd>checkpoint_parameter</dd></dl>

Arguments

CSA reference xlsxAnalyzer — CSA_reference_xlsxAnalyzer

<dl>

 <dt>ref_xlsx_file</dt>
<dd>ref_xlsx_file</dd>

 <dt>input_path_hrms</dt>
<dd>input_path_hrms</dd>

 <dt>PARAM</dt>
<dd>PARAM</dd>

 <dt>PARAM_ID</dt>
<dd>PARAM_ID</dd>

 <dt>checkpoint_parameter</dt>
<dd>checkpoint_parameter</dd>

</dl>

CSA_reference_xlsxAnalyzer: CSA reference xlsxAnalyzer

Description

Usage

Value

Arguments