DIA_workflow

This function runs the Data-Independent Acquisition (DIA) analysis.

A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.CSA

Composite Spectra Analysis (CSA) for High-Resolution Mass
Spectrometry Analyses

Sadjad Fakouri-Baygi

DIA_workflow function

<dl> <dt>PARAM_DIA</dt>
<dd>DIA parameters</dd></dl>

Arguments

DIA Workflow — DIA_workflow

<dl>

 <dt>PARAM_DIA</dt>
<dd>DIA parameters</dd>

</dl>

DIA_workflow: DIA Workflow

Description

Usage

Value

Arguments