aligned_fragmentation_spectra_annotator

This function detects frequent matched compounds across multiple samples on the aligned peak table matrix.

A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.CSA

Composite Spectra Analysis (CSA) for High-Resolution Mass
Spectrometry Analyses

Sadjad Fakouri-Baygi

aligned_fragmentation_spectra_annotator function

<dl> <dt>PARAM_AT</dt>
<dd>a parameter driven from the `CSA_AlignedTable_xlsxAnalyzer` module.</dd> <dt>output_path</dt>
<dd>output path</dd></dl>

Arguments

Aligned Fragmentation Spectra Annotator — aligned_fragmentation_spectra_annotator

<dl>

 <dt>PARAM_AT</dt>
<dd>a parameter driven from the `CSA_AlignedTable_xlsxAnalyzer` module.</dd>

 <dt>output_path</dt>
<dd>output path</dd>

</dl>

aligned_fragmentation_spectra_annotator: Aligned Fragmentation Spectra Annotator

Description

Usage

Value

Arguments