FSA_annotation_text_repel

This function is to set annotations on the spectra plots with a reasonable distance to avoid overlying annotations.

The 'IDSL.FSA' package was designed to annotate standard .msp (mass spectra format) and .mgf (Mascot generic format) files using mass spectral entropy similarity, dot product (cosine) similarity, and normalized Euclidean mass error (NEME) followed by intelligent pre-filtering steps for rapid spectra searches. 'IDSL.FSA' also provides a number of modules to convert and manipulate .msp and .mgf files. The 'IDSL.FSA' workflow was integrated in the 'IDSL.CSA' and 'IDSL.NPA' packages introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.FSA

Fragmentation Spectra Analysis (FSA)

Sadjad Fakouri-Baygi

FSA_annotation_text_repel function

<dl> <dt>FSAspectra</dt>
<dd>FSAspectra</dd> <dt>nGridX</dt>
<dd>number of grids on the x-axis</dd> <dt>nGridY</dt>
<dd>number of grids on the y-axis</dd></dl>

Arguments

FSA annotation text repel — FSA_annotation_text_repel

<dl>

 <dt>FSAspectra</dt>
<dd>FSAspectra</dd>

 <dt>nGridX</dt>
<dd>number of grids on the x-axis</dd>

 <dt>nGridY</dt>
<dd>number of grids on the y-axis</dd>

</dl>

FSA_annotation_text_repel: FSA annotation text repel

Description

Usage

Value

Arguments