FSA_xlsxAnalyzer

This function processes the spreadsheet of the FSA parameters to ensure the parameter inputs are consistent with the requirements of the IDSL.FSA pipeline.

The 'IDSL.FSA' package was designed to annotate standard .msp (mass spectra format) and .mgf (Mascot generic format) files using mass spectral entropy similarity, dot product (cosine) similarity, and normalized Euclidean mass error (NEME) followed by intelligent pre-filtering steps for rapid spectra searches. 'IDSL.FSA' also provides a number of modules to convert and manipulate .msp and .mgf files. The 'IDSL.FSA' workflow was integrated in the 'IDSL.CSA' and 'IDSL.NPA' packages introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.FSA

Fragmentation Spectra Analysis (FSA)

Sadjad Fakouri-Baygi

FSA_xlsxAnalyzer function

<dl> <dt>spreadsheet</dt>
<dd>FSA spreadsheet</dd></dl>

Arguments

FSA xlsx Analyzer — FSA_xlsxAnalyzer

<dl>

 <dt>spreadsheet</dt>
<dd>FSA spreadsheet</dd>

</dl>

FSA_xlsxAnalyzer: FSA xlsx Analyzer

Description

Usage

Value

Arguments