FSdb2PeakXcolSubsetter

The 'IDSL.FSA' package was designed to annotate standard .msp (mass spectra format) and .mgf (Mascot generic format) files using mass spectral entropy similarity, dot product (cosine) similarity, and normalized Euclidean mass error (NEME) followed by intelligent pre-filtering steps for rapid spectra searches. 'IDSL.FSA' also provides a number of modules to convert and manipulate .msp and .mgf files. The 'IDSL.FSA' workflow was integrated in the 'IDSL.CSA' and 'IDSL.NPA' packages introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.FSA

Fragmentation Spectra Analysis (FSA)

Sadjad Fakouri-Baygi

FSdb2PeakXcolSubsetter function

<dl> <dt>FSdb_address</dt>
<dd>FSdb_address</dd> <dt>peak_alignment_folder</dt>
<dd>peak_alignment_folder</dd> <dt>metavariable</dt>
<dd>metavariable</dd> <dt>number_processing_threads</dt>
<dd>Number of processing threads for multi-threaded processing</dd></dl>

Arguments

FSdb2PeakXcolSubsetter — FSdb2PeakXcolSubsetter

<dl>

 <dt>FSdb_address</dt>
<dd>FSdb_address</dd>

 <dt>peak_alignment_folder</dt>
<dd>peak_alignment_folder</dd>

 <dt>metavariable</dt>
<dd>metavariable</dd>

 <dt>number_processing_threads</dt>
<dd>Number of processing threads for multi-threaded processing</dd>

</dl>

FSdb2PeakXcolSubsetter: FSdb2PeakXcolSubsetter

Description

Usage

Value

Arguments