FSdb_subsetter

The 'IDSL.FSA' package was designed to annotate standard .msp (mass spectra format) and .mgf (Mascot generic format) files using mass spectral entropy similarity, dot product (cosine) similarity, and normalized Euclidean mass error (NEME) followed by intelligent pre-filtering steps for rapid spectra searches. 'IDSL.FSA' also provides a number of modules to convert and manipulate .msp and .mgf files. The 'IDSL.FSA' workflow was integrated in the 'IDSL.CSA' and 'IDSL.NPA' packages introduced in <doi:10.1021/acs.analchem.3c00376>.

Dinesh Barupal

IDSL.FSA

Fragmentation Spectra Analysis (FSA)

Sadjad Fakouri-Baygi

FSdb_subsetter function

<dl> <dt>FSdb</dt>
<dd>FSdb</dd> <dt>inclusionIDs</dt>
<dd>inclusionIDs</dd> <dt>exclusionIDs</dt>
<dd>exclusionIDs</dd></dl>

Arguments

FSdb subsetter — FSdb_subsetter

<dl>

 <dt>FSdb</dt>
<dd>FSdb</dd>

 <dt>inclusionIDs</dt>
<dd>inclusionIDs</dd>

 <dt>exclusionIDs</dt>
<dd>exclusionIDs</dd>

</dl>

FSdb_subsetter: FSdb subsetter

Description

Usage

Value

Arguments