cpp_extract

fname

List, ifd information of class IFC_ifd

colors

channels

CharacterVector of indices for each channels

physicalChannel

NumericVector of minimal values for each channels

xmin

NumericVector of maximal values for each channels

xmax

IntegerVector of removal method to be used for each channels

removal

LogicalVector of whether to add_noise for each channels

add_noise

LogicalVector of whether to use full_range for each channels

full_range

LogicalVector of whether to use force_range for each channels

force_range

NumericVector of the gamma for each channels

gamma

IntegerVector, channels to extract

chan_to_extract

uint8_t, type of masked to extract.
- 0: no mask
- 1: at least one raw mask
- 2: at least one clipped
- 3: at least one masked
- 4: at least one MC

extract_msk

string, color mode export. Either "rgb", "gray" or "raw". Default is "raw".

mode

a length 2 IntegerVector of final dimensions (height,width) of the image. Default is 0,0 for no change.

size

bool, whether to display information (use for debugging purpose). Default is false.

verbose

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream<c2><ae>' and 'FlowSight<c2><ae>' cytometers ('Amnis<c2><ae>', part of 'Luminex<c2><ae>'). Provides an easy and simple way to read, write and subset .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

cpp_extract: IFC_object Extraction

Description

Arguments