popsRetrieveGraph

an `IFC_data` object extracted by ExtractFromDAF(extract_features = TRUE) or ExtractFromXIF(extract_features = TRUE).

names of graphical populations present in 'obj'. Note that they should be siblings.

pops

when original graph is not an histogram, whether to display it as "scatter" or "density". Default is "density".

vis2D

whether to add all 'pop' siblings in the graph. Default is FALSE.

all_siblings

Retrieves the graph a graphical population originate from

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream<c2><ae>' and 'FlowSight<c2><ae>' cytometers ('Amnis<c2><ae>', part of 'Luminex<c2><ae>'). Provides an easy and simple way to read, write and subset .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

popsRetrieveGraph: Graph Retrieval from Graphical IFC_pops

Description

Usage

Arguments

Value