adjustGraph

an object of class `IFC_data` extracted by ExtractFromDAF(extract_features = TRUE) or ExtractFromXIF(extract_features = TRUE).

when provided, indices of desired graphs.
Note that indices are read from left to right, from top to bottom.

selection

whether to try to adjust graph when possible. Default is TRUE.

adjust_graph

Helper to readjust `IFC_data` graphs in case of missing feature, region, population.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream<c2><ae>' and 'FlowSight<c2><ae>' cytometers ('Amnis<c2><ae>', part of 'Luminex<c2><ae>'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

adjustGraph: IFC Graph Adjustment

Description

Usage

Arguments