toXML2_spillover_gs

Helper to convert spillover to XML nodes in GatingML files.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®', part of 'Luminex®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

toXML2_spillover_gs function

<dl><dt>spillover</dt>
<dd>a spillover matrix. It has to have colnames and rownames.</dd>
<dt>name</dt>
<dd>the name to use to identify the node.</dd></dl>

Arguments

Spillover GatingML Conversion — toXML2_spillover_gs

<dl>

<dt>spillover</dt>
<dd>a spillover matrix. It has to have colnames and rownames.</dd>


<dt>name</dt>
<dd>the name to use to identify the node.</dd>

</dl>

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toXML2_spillover_gs: Spillover GatingML Conversion

Description

Usage

Value

Arguments