redefine_features_def_feat

Helper to rename a feature within IFC_features_def.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®', part of 'Luminex®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

redefine_features_def_feat function

<dl><dt>features_def</dt>
<dd>an `IFC_features_def` object or a list containing features definition. Default is missing.</dd>
<dt>to_match_feat</dt>
<dd>a string with a features_def name to use for matching 'features_def' names. Default is NULL</dd>
<dt>to_replace_feat</dt>
<dd>a string of features_def name to use for replacing 'features_def' names. Default is NULL</dd>
<dt>force_default</dt>
<dd>whether to force default names for features (except the one defined by 'to_replace_feat').
This removes custom names and replaces them with default values. Default is FALSE.</dd>
<dt>...</dt>
<dd>Other arguments to be passed.</dd></dl>

Arguments

IFC_features_def Feature Redefinition — redefine_features_def_feat

<dl>

<dt>features_def</dt>
<dd>an `IFC_features_def` object or a list containing features definition. Default is missing.</dd>


<dt>to_match_feat</dt>
<dd>a string with a features_def name to use for matching 'features_def' names. Default is NULL</dd>


<dt>to_replace_feat</dt>
<dd>a string of features_def name to use for replacing 'features_def' names. Default is NULL</dd>


<dt>force_default</dt>
<dd>whether to force default names for features (except the one defined by 'to_replace_feat').
This removes custom names and replaces them with default values. Default is FALSE.</dd>


<dt>...</dt>
<dd>Other arguments to be passed.</dd>

</dl>

redefine_features_def_feat: IFC_features_def Feature Redefinition

Description

Usage

Value

Arguments