smoothLinLog

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®', part of 'Luminex®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

smoothLinLog function

<dl><dt>x</dt>
<dd>A numeric vector.</dd>
<dt>hyper</dt>
<dd>value where transition between Lin/Log is applied.</dd>
<dt>base</dt>
<dd>base of Log scale.</dd>
<dt>lin_comp</dt>
<dd>value that is used to smooth transition between Lin/Log. Default is log(base).</dd></dl>

Arguments

Smooth LinLog Transformation — smoothLinLog

<dl>

<dt>x</dt>
<dd>A numeric vector.</dd>


<dt>hyper</dt>
<dd>value where transition between Lin/Log is applied.</dd>


<dt>base</dt>
<dd>base of Log scale.</dd>


<dt>lin_comp</dt>
<dd>value that is used to smooth transition between Lin/Log. Default is log(base).</dd>

</dl>

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smoothLinLog: Smooth LinLog Transformation

Description

Usage

Value

Arguments