BatchStatsReport

Generates statistics report on batch of files or `IFC_data` objects.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

BatchStatsReport function

<dl><dt>fileName, obj</dt>
<dd>either one or the other. Path to file(s) to read from for 'fileName' or list of `IFC_data` objects for obj.</dd>
<dt>stats</dt>
<dd>template defining stats to compute as extracted by getSTATSREPORT().</dd>
<dt>gating</dt>
<dd>an `IFC_gating` object as extracted by readGatingStrategy(). Default is missing.
If not missing, each `IFC_data` provided in 'obj' or read from 'fileName' will be passed to applyGatingStrategy() before creating the report.</dd>
<dt>display_progress</dt>
<dd>whether to display a progress bar. Default is TRUE.</dd>
<dt>...</dt>
<dd>other parameters to be passed.</dd></dl>

Arguments

Batch Generation of Statistic Report — BatchStatsReport

<dl>

<dt>fileName, obj</dt>
<dd>either one or the other. Path to file(s) to read from for 'fileName' or list of `IFC_data` objects for obj.</dd>


<dt>stats</dt>
<dd>template defining stats to compute as extracted by getSTATSREPORT().</dd>


<dt>gating</dt>
<dd>an `IFC_gating` object as extracted by readGatingStrategy(). Default is missing.
If not missing, each `IFC_data` provided in 'obj' or read from 'fileName' will be passed to applyGatingStrategy() before creating the report.</dd>


<dt>display_progress</dt>
<dd>whether to display a progress bar. Default is TRUE.</dd>


<dt>...</dt>
<dd>other parameters to be passed.</dd>

</dl>

BatchStatsReport: Batch Generation of Statistic Report

Description

Usage

Value

Arguments