base_axis_constr

Helper to rescale and label axes when linlog / asinh transformation is used.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

base_axis_constr function

<dl><dt>lim</dt>
<dd>vector of length 2 of axis extents.</dd>
<dt>trans</dt>
<dd>transformation applied. Defaut is "P".</dd>
<dt>nint</dt>
<dd>positive integer value indicating (approximately) the desired number of intervals. Default is 10.</dd></dl>

Arguments

Axis Constructor — base_axis_constr

<dl>

<dt>lim</dt>
<dd>vector of length 2 of axis extents.</dd>


<dt>trans</dt>
<dd>transformation applied. Defaut is "P".</dd>


<dt>nint</dt>
<dd>positive integer value indicating (approximately) the desired number of intervals. Default is 10.</dd>

</dl>

base_axis_constr: Axis Constructor

Description

Usage

Arguments