cpp_mark

Writes matrix <code>'B'</code> in matrix <code>'A'</code> according to <code>'mask'</code>.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

cpp_mark function

<dl><dt>A</dt>
<dd>a NumericMatrix.</dd>
<dt>B</dt>
<dd>a NumericMatrix.</dd>
<dt>mask</dt>
<dd>a NumericMatrix.</dd>
<dt>xoff</dt>
<dd>x offset in <code>'A'</code> to start writing <code>'B'</code>.</dd>
<dt>yoff</dt>
<dd>x offset in <code>'A'</code> to start writing <code>'B'</code>.</dd>
<dt>invert</dt>
<dd>a logical. Default is <code>false</code>.
When <code>false</code>, the default, values of <code>'B'</code> are written into <code>'A'</code> when <code>'mask'</code> is not <code>0.0</code>.
When <code>true</code>, values of '<code>1-B</code>' are written into <code>'A'</code> when <code>'mask'</code> is not <code>0.0</code>.</dd></dl>

Arguments

Matrix to Matrix Writer According to Mask with Offsets — cpp_mark

<dl>

<dt>A</dt>
<dd>a NumericMatrix.</dd>


<dt>B</dt>
<dd>a NumericMatrix.</dd>


<dt>mask</dt>
<dd>a NumericMatrix.</dd>


<dt>xoff</dt>
<dd>x offset in <code>'A'</code> to start writing <code>'B'</code>.</dd>


<dt>yoff</dt>
<dd>x offset in <code>'A'</code> to start writing <code>'B'</code>.</dd>


<dt>invert</dt>
<dd>a logical. Default is <code>false</code>.
When <code>false</code>, the default, values of <code>'B'</code> are written into <code>'A'</code> when <code>'mask'</code> is not <code>0.0</code>.
When <code>true</code>, values of '<code>1-B</code>' are written into <code>'A'</code> when <code>'mask'</code> is not <code>0.0</code>.</dd>

</dl>

cpp_mark: Matrix to Matrix Writer According to Mask with Offsets

Description

Arguments