cpp_pnt_in_gate

This function checks if points lie in a polygon or ellipse.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

cpp_pnt_in_gate function

<dl><dt>pnts</dt>
<dd>NumericMatrix, a 2-columns matrix with (x and y) coordinates of the points of interest.</dd>
<dt>gate</dt>
<dd>NumericMatrix, a 2-columns matrix defining polygon vertices or ellipse boundaries.</dd>
<dt>algorithm</dt>
<dd>int, used for computation. Default is 1. 
1: Trigonometry. 
2: Special case = axes-aligned rectangle. 
3: Special case = axes-aligned ellipse.</dd>
<dt>epsilon</dt>
<dd>double, epsilon threshold value. Default is 0.000000000001</dd></dl>

Arguments

Point in Gate — cpp_pnt_in_gate

<dl>

<dt>pnts</dt>
<dd>NumericMatrix, a 2-columns matrix with (x and y) coordinates of the points of interest.</dd>


<dt>gate</dt>
<dd>NumericMatrix, a 2-columns matrix defining polygon vertices or ellipse boundaries.</dd>


<dt>algorithm</dt>
<dd>int, used for computation. Default is 1. 
1: Trigonometry. 
2: Special case = axes-aligned rectangle. 
3: Special case = axes-aligned ellipse.</dd>


<dt>epsilon</dt>
<dd>double, epsilon threshold value. Default is 0.000000000001</dd>

</dl>

cpp_pnt_in_gate: Point in Gate

Description

Arguments