plot_raster

Helper to convert `IFC_plot` to 'raster' plot.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

plot_raster function

<dl><dt>obj</dt>
<dd>an object of class `IFC_plot` as created by <code>plotGraph</code>.</dd>
<dt>pntsonedge</dt>
<dd>whether points outside of plotting region should be bounded on the edge. Default is FALSE to clip points.
NA can be used to produce hybrid display, with plot being drawn with `pntsonedge` = FALSE on top of plot with `pntsonedge` = TRUE.</dd></dl>

Arguments

`IFC_plot` Conversion to 'raster' Plot — plot_raster

<dl>

<dt>obj</dt>
<dd>an object of class `IFC_plot` as created by <code>plotGraph</code>.</dd>


<dt>pntsonedge</dt>
<dd>whether points outside of plotting region should be bounded on the edge. Default is FALSE to clip points.
NA can be used to produce hybrid display, with plot being drawn with `pntsonedge` = FALSE on top of plot with `pntsonedge` = TRUE.</dd>

</dl>

plot_raster: `IFC_plot` Conversion to 'raster' Plot

Description

Usage

Arguments