readFCSdelimiter

Helper to extract delimiter from Flow Cytometry Standard (FCS) compliant files.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

readFCSdelimiter function

<dl><dt>fileName</dt>
<dd>path to file.</dd>
<dt>at</dt>
<dd>offset of delimiter. Default is 58.</dd>
<dt>version</dt>
<dd>version to check keywords compliance against. Default is 3.0.</dd>
<dt>encoding</dt>
<dd>name of the encoding for raw to character conversion. Default is "UTF-8".</dd>
<dt>...</dt>
<dd>other arguments to be passed.</dd></dl>

Arguments

FCS Delimiter Reader — readFCSdelimiter

<dl>

<dt>fileName</dt>
<dd>path to file.</dd>


<dt>at</dt>
<dd>offset of delimiter. Default is 58.</dd>


<dt>version</dt>
<dd>version to check keywords compliance against. Default is 3.0.</dd>


<dt>encoding</dt>
<dd>name of the encoding for raw to character conversion. Default is "UTF-8".</dd>


<dt>...</dt>
<dd>other arguments to be passed.</dd>

</dl>

readFCSdelimiter: FCS Delimiter Reader

Description

Usage

Arguments